Browse entries in the PDBbind-CN Database

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Related entries of code: 4dy6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2i2bRCSB PDB    PDBbind272aa, >2I2B_1|Chain... *
2i2cRCSB PDB    PDBbind272aa, >2I2C_1|Chain... at 100%
5dhpRCSB PDB    PDBbind272aa, >5DHP_1|Chains... at 100%
5dhqRCSB PDB    PDBbind272aa, >5DHQ_1|Chains... at 100%
5dhrRCSB PDB    PDBbind272aa, >5DHR_1|Chains... at 100%
5dhsRCSB PDB    PDBbind272aa, >5DHS_1|Chains... at 100%
5dhtRCSB PDB    PDBbind272aa, >5DHT_1|Chains... at 100%
5dhuRCSB PDB    PDBbind272aa, >5DHU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4dy6
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameLmNADK1
Ligand NameA22
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=0.04mM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2007) J.Biol.Chem. Vol. 282: pp. 33925-33934
Ligand Properties
Formula C20H30N10O16P3
Molecular Weight 759.431
Exact Mass 759.105
No. of atoms 79
No. of bonds 84
Polar Surface Area 437.69
LOGP Value -7.53      (Computed with XLOGP3)
-2.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 16
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 26
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8Y8D7  
Entrez Gene IDNCBI Entrez Gene ID: 986453  
ASDInformation of known allosteric effects of PDB entries

 
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