Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4g8l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1wdyRCSB PDB    PDBbind285aa, >1WDY_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1wdyRCSB PDB    PDBbind25A

Entry Information
PDB ID4g8l
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name2-5A-dependent ribonuclease
Ligand Name25A
EC.Number E.C.3.1.26
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=10nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Cell Rep Vol. 2: pp. 902-913
Ligand Properties
Formula C30H45N15O18P3
Molecular Weight 996.689
Exact Mass 996.228
No. of atoms 111
No. of bonds 119
Polar Surface Area 538.52
LOGP Value -11.14      (Computed with XLOGP3)
-3.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 15
No. of Rotatable Bonds: 19
No. of Nitrogen and Oxygen Atoms: 33
No. of Rings: 9
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q05823  
Entrez Gene IDNCBI Entrez Gene ID: 6041  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com