Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4gkc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4edeRCSB PDB    PDBbind133aa, >4EDE_1|Chains... *
4eejRCSB PDB    PDBbind133aa, >4EEJ_1|Chains... at 98%
4efgRCSB PDB    PDBbind133aa, >4EFG_1|Chains... at 99%
4exzRCSB PDB    PDBbind133aa, >4EXZ_1|Chains... at 94%
4ruuRCSB PDB    PDBbind133aa, >4RUU_1|Chains... at 95%
6e7mRCSB PDB    PDBbind133aa, >6E7M_1|Chains... at 93%
6e5sRCSB PDB    PDBbind133aa, >6E5S_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2g79RCSB PDB    PDBbindRET
3hx3RCSB PDB    PDBbindRET
3hy5RCSB PDB    PDBbindRET
4cizRCSB PDB    PDBbindRET
4edeRCSB PDB    PDBbindRET
4eejRCSB PDB    PDBbindRET
4efgRCSB PDB    PDBbindRET
4exzRCSB PDB    PDBbindRET
4i9rRCSB PDB    PDBbindRET
4i9sRCSB PDB    PDBbindRET
4ruuRCSB PDB    PDBbindRET
6e7mRCSB PDB    PDBbindRET
6e5sRCSB PDB    PDBbindRET
Entry Information
PDB ID4gkc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinol-binding protein 2
Ligand NameRET
EC.Number E.C.-.-.-.-
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)Kd=150nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Science Vol. 338: pp. 1340-1343
Ligand Properties
Formula C20H30
Molecular Weight 270.452
Exact Mass 270.235
No. of atoms 50
No. of bonds 50
Polar Surface Area 0
LOGP Value 6.99      (Computed with XLOGP3)
6.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 0
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P50120  
Entrez Gene IDNCBI Entrez Gene ID: 5948  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com