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Related entries of code: 4j5e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4j58RCSB PDB    PDBbind164aa, >4J58_1|Chain... at 100%
4j59RCSB PDB    PDBbind164aa, >4J59_1|Chain... at 100%
4j5bRCSB PDB    PDBbind164aa, >4J5B_1|Chain... at 100%
4j5cRCSB PDB    PDBbind164aa, >4J5C_1|Chain... at 100%
4j5dRCSB PDB    PDBbind164aa, >4J5D_1|Chain... at 100%
6ra1RCSB PDB    PDBbind164aa, >6RA1_1|Chain... at 100%
6r9xRCSB PDB    PDBbind164aa, >6R9X_1|Chain... at 100%
6r9uRCSB PDB    PDBbind164aa, >6R9U_1|Chain... at 100%
6r9sRCSB PDB    PDBbind164aa, >6R9S_1|Chain... at 100%
6r8wRCSB PDB    PDBbind164aa, >6R8W_1|Chain... at 100%
6r8oRCSB PDB    PDBbind164aa, >6R8O_1|Chain... at 100%
6r8lRCSB PDB    PDBbind164aa, >6R8L_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4j5e
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman Cyclophilin D (K175I mutation)
Ligand Name7B7
EC.Number E.C.5.2.1.8
Resolution 0.99(Å)
Affinity (Kd/Ki/IC50)IC50=11.4uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat Commun Vol. 7: pp. 12777-12777
Ligand Properties
Formula C21H26N4O3
Molecular Weight 382.456
Exact Mass 382.200
No. of atoms 54
No. of bonds 56
Polar Surface Area 96.69
LOGP Value 1.70      (Computed with XLOGP3)
3.74      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P30405  
Entrez Gene IDNCBI Entrez Gene ID: 10105  
ASDInformation of known allosteric effects of PDB entries

 
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