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Related entries of code: 4pqa
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1j37RCSB PDB    PDBbindX8Z
2x8zRCSB PDB    PDBbindX8Z
4c1dRCSB PDB    PDBbindX8Z
4c1fRCSB PDB    PDBbindX8Z
4c1hRCSB PDB    PDBbindX8Z
4exsRCSB PDB    PDBbindX8Z
Entry Information
PDB ID4pqa
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namesuccinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58
Ligand NameX8Z
EC.Number E.C.3.5.1.18
Resolution 1.78(Å)
Affinity (Kd/Ki/IC50)Ki=2.8uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Biochemistry Vol. 54: pp. 4834-4844
Ligand Properties
Formula C9H15NO3S
Molecular Weight 217.285
Exact Mass 217.077
No. of atoms 29
No. of bonds 29
Polar Surface Area 96.41
LOGP Value 1.52      (Computed with XLOGP3)
0.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9JYL2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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