Browse entries in the PDBbind-CN Database

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Related entries of code: 4q19
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ipxRCSB PDB    PDBbind241aa, >3IPX_1|Chain... at 99%
3ipyRCSB PDB    PDBbind241aa, >3IPY_1|Chains... at 99%
4jljRCSB PDB    PDBbind280aa, >4JLJ_1|Chains... at 95%
4jlmRCSB PDB    PDBbind280aa, >4JLM_1|Chains... at 95%
4jlnRCSB PDB    PDBbind280aa, >4JLN_1|Chains... at 95%
4kcgRCSB PDB    PDBbind280aa, >4KCG_1|Chains... at 95%
4q18RCSB PDB    PDBbind280aa, >4Q18_1|Chains... at 95%
4q1aRCSB PDB    PDBbind280aa, >4Q1A_1|Chains... at 95%
4q1bRCSB PDB    PDBbind280aa, >4Q1B_1|Chains... at 95%
4q1cRCSB PDB    PDBbind280aa, >4Q1C_1|Chains... at 95%
4q1dRCSB PDB    PDBbind280aa, >4Q1D_1|Chains... at 95%
4q1eRCSB PDB    PDBbind280aa, >4Q1E_1|Chains... at 95%
4q1fRCSB PDB    PDBbind280aa, >4Q1F_1|Chains... at 95%
5mqlRCSB PDB    PDBbind289aa, >5MQL_1|Chains... *
5mqtRCSB PDB    PDBbind289aa, >5MQT_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4q19
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameDeoxycytidine kinase dCK C4S-S74E
Ligand Name2XL
EC.Number E.C.2.7.1.74
Resolution 2.09(Å)
Affinity (Kd/Ki/IC50)Ki=8.9nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Med.Chem. Vol. 57: pp. 9480-9494
Ligand Properties
Formula C18H21N5O2S2
Molecular Weight 403.522
Exact Mass 403.114
No. of atoms 48
No. of bonds 50
Polar Surface Area 173.71
LOGP Value 3.38      (Computed with XLOGP3)
4.89      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P27707  
Entrez Gene IDNCBI Entrez Gene ID: 1633  
ASDInformation of known allosteric effects of PDB entries
 
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