Browse entries in the PDBbind-CN Database

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Related entries of code: 4qf8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1fv0RCSB PDB    PDBbind121aa, >1FV0_1|Chains... *
1jq8RCSB PDB    PDBbind121aa, >1JQ8_1|Chains... at 100%
1jq9RCSB PDB    PDBbind121aa, >1JQ9_1|Chains... at 100%
1kpmRCSB PDB    PDBbind121aa, >1KPM_1|Chains... at 100%
1q7aRCSB PDB    PDBbind121aa, >1Q7A_1|Chain... at 100%
1sv3RCSB PDB    PDBbind121aa, >1SV3_1|Chain... at 100%
2armRCSB PDB    PDBbind121aa, >2ARM_1|Chain... at 100%
2b17RCSB PDB    PDBbind121aa, >2B17_1|Chain... at 100%
3h1xRCSB PDB    PDBbind121aa, >3H1X_1|Chain... at 100%
4qemRCSB PDB    PDBbind121aa, >4QEM_1|Chain... at 100%
4qerRCSB PDB    PDBbind121aa, >4QER_1|Chain... at 100%
4qf7RCSB PDB    PDBbind121aa, >4QF7_1|Chain... at 100%
4qgdRCSB PDB    PDBbind121aa, >4QGD_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1potRCSB PDB    PDBbindSPD
3ttnRCSB PDB    PDBbindSPD
4jdfRCSB PDB    PDBbindSPD
6ikmRCSB PDB    PDBbindSPD
Entry Information
PDB ID4qf8
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePhospholipase A2 VRV-PL-VIIIa
Ligand NameSPD
EC.Number E.C.3.1.1.4
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=31nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Biochim.Biophys.Acta Vol. 1854: pp. 269-277
Ligand Properties
Formula C7H22N3
Molecular Weight 148.270
Exact Mass 148.181
No. of atoms 32
No. of bonds 31
Polar Surface Area 71.89
LOGP Value -1.01      (Computed with XLOGP3)
-2.80      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P59071  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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