Browse entries in the PDBbind-CN Database

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Related entries of code: 4qgf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4gfdRCSB PDB    PDBbind205aa, >4GFD_1|Chains... *
4gsyRCSB PDB    PDBbind205aa, >4GSY_1|Chains... at 100%
4hdcRCSB PDB    PDBbind205aa, >4HDC_1|Chains... at 100%
4hejRCSB PDB    PDBbind205aa, >4HEJ_1|Chains... at 100%
4hlcRCSB PDB    PDBbind205aa, >4HLC_1|Chains... at 100%
4hldRCSB PDB    PDBbind205aa, >4HLD_1|Chains... at 100%
4qg7RCSB PDB    PDBbind205aa, >4QG7_1|Chains... at 100%
4qgaRCSB PDB    PDBbind205aa, >4QGA_1|Chains... at 100%
4qggRCSB PDB    PDBbind205aa, >4QGG_1|Chains... at 100%
4qghRCSB PDB    PDBbind205aa, >4QGH_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4qgf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameThymidylate kinase TMK
Ligand Name32B
EC.Number E.C.2.7.4.9
Resolution 1.83(Å)
Affinity (Kd/Ki/IC50)IC50=69nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Med.Chem. Vol. 57: pp. 4584-4597
Ligand Properties
Formula C27H31ClN3O6
Molecular Weight 529.005
Exact Mass 528.190
No. of atoms 68
No. of bonds 71
Polar Surface Area 115.06
LOGP Value 3.06      (Computed with XLOGP3)
4.94      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6GJI9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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