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Related entries of code: 4rdn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4rdn
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameYTH domain-containing family protein 2 YTH-YTHDF2
Ligand Name6MD
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=1.2uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Cell Res. Vol. 24: pp. 1490-1492
Ligand Properties
Formula C11H15N5O4
Molecular Weight 281.268
Exact Mass 281.112
No. of atoms 35
No. of bonds 37
Polar Surface Area 125.55
LOGP Value -1.24      (Computed with XLOGP3)
-1.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y5A9  
Entrez Gene IDNCBI Entrez Gene ID: 51441  
ASDInformation of known allosteric effects of PDB entries
 
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