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Related entries of code: 4up5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4up5
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN PHD-HD1
Ligand Name94W
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=2.5mM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Acs Chem.Biol. Vol. 9: pp. 2864
Ligand Properties
Formula C8H8N2OS
Molecular Weight 180.227
Exact Mass 180.036
No. of atoms 20
No. of bonds 21
Polar Surface Area 76.38
LOGP Value 2.00      (Computed with XLOGP3)
2.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q86UU0  Q9BRQ0  
Entrez Gene IDNCBI Entrez Gene ID: 283149  90780  
ASDInformation of known allosteric effects of PDB entries

 
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