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Related entries of code: 4xkc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4xkbRCSB PDB    PDBbind233aa, >4XKB_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4xkc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameYcf53-like protein
Ligand NameMD9
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=1.36uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Mol Plant Vol. 8: pp. 1125-1127
Ligand Properties
Formula C30H28MgN4O4
Molecular Weight 532.873
Exact Mass 532.196
No. of atoms 67
No. of bonds 74
Polar Surface Area 94.32
LOGP Value 5.13      (Computed with XLOGP3)
1.04      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 8
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P72583  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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