Browse entries in the PDBbind-CN Database

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Related entries of code: 4y3y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1eedRCSB PDB    PDBbind330aa, >1EED_1|Chain... at 100%
1entRCSB PDB    PDBbind330aa, >1ENT_1|Chain... at 100%
1epoRCSB PDB    PDBbind330aa, >1EPO_1|Chain... at 100%
1eppRCSB PDB    PDBbind330aa, >1EPP_1|Chain... at 100%
1epqRCSB PDB    PDBbind330aa, >1EPQ_1|Chain... at 100%
1gvuRCSB PDB    PDBbind330aa, >1GVU_1|Chain... at 100%
1gvwRCSB PDB    PDBbind330aa, >1GVW_1|Chain... at 100%
1gvxRCSB PDB    PDBbind330aa, >1GVX_1|Chain... at 100%
2er0RCSB PDB    PDBbind330aa, >2ER0_1|Chain... at 100%
2er6RCSB PDB    PDBbind330aa, >2ER6_1|Chain... at 100%
2er9RCSB PDB    PDBbind330aa, >2ER9_1|Chain... at 100%
2v00RCSB PDB    PDBbind330aa, >2V00_1|Chain... at 100%
3er3RCSB PDB    PDBbind330aa, >3ER3_1|Chain... at 100%
3er5RCSB PDB    PDBbind330aa, >3ER5_1|Chain... at 100%
3prsRCSB PDB    PDBbind330aa, >3PRS_1|Chain... at 100%
3pwwRCSB PDB    PDBbind330aa, >3PWW_1|Chain... at 100%
3uriRCSB PDB    PDBbind330aa, >3URI_1|Chain... at 100%
3wz6RCSB PDB    PDBbind330aa, >3WZ6_1|Chain... at 100%
3wz7RCSB PDB    PDBbind330aa, >3WZ7_1|Chain... at 100%
3wz8RCSB PDB    PDBbind330aa, >3WZ8_1|Chain... at 100%
4er1RCSB PDB    PDBbind330aa, >4ER1_1|Chain... at 100%
4er2RCSB PDB    PDBbind330aa, >4ER2_1|Chain... at 100%
4er4RCSB PDB    PDBbind330aa, >4ER4_1|Chain... at 100%
4kupRCSB PDB    PDBbind330aa, >4KUP_1|Chain... at 100%
4lp9RCSB PDB    PDBbind330aa, >4LP9_1|Chain... at 100%
4y38RCSB PDB    PDBbind330aa, >4Y38_1|Chain... at 100%
4y3jRCSB PDB    PDBbind330aa, >4Y3J_1|Chain... at 100%
4y4gRCSB PDB    PDBbind330aa, >4Y4G_1|Chain... at 100%
4y4jRCSB PDB    PDBbind330aa, >4Y4J_1|Chain... at 100%
4ze6RCSB PDB    PDBbind330aa, >4ZE6_1|Chain... at 100%
5er1RCSB PDB    PDBbind330aa, >5ER1_1|Chain... at 100%
5er2RCSB PDB    PDBbind330aa, >5ER2_1|Chain... at 100%
5hctRCSB PDB    PDBbind419aa, >5HCT_1|Chain... *
5lwsRCSB PDB    PDBbind330aa, >5LWS_1|Chain... at 100%
5ojeRCSB PDB    PDBbind330aa, >5OJE_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4y3y
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEndothiapepsin
Ligand NameDCL
EC.Number E.C.3.4.23.22
Resolution 1.35(Å)
Affinity (Kd/Ki/IC50)Kd=4.5mM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Acta Crystallogr.,Sect.F Vol. 72: pp. 346-355
Ligand Properties
Formula C6H16NO
Molecular Weight 118.197
Exact Mass 118.123
No. of atoms 24
No. of bonds 23
Polar Surface Area 47.87
LOGP Value 0.36      (Computed with XLOGP3)
-0.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11838  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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