Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4y6p
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4y67RCSB PDB    PDBbind422aa, >4Y67_1|Chains... *
4y6rRCSB PDB    PDBbind422aa, >4Y6R_1|Chains... at 100%
4y6sRCSB PDB    PDBbind422aa, >4Y6S_1|Chains... at 100%
5jazRCSB PDB    PDBbind422aa, >5JAZ_1|Chains... at 100%
5jbiRCSB PDB    PDBbind422aa, >5JBI_1|Chains... at 100%
5jc1RCSB PDB    PDBbind422aa, >5JC1_1|Chains... at 100%
5jmpRCSB PDB    PDBbind422aa, >5JMP_1|Chains... at 100%
5jmwRCSB PDB    PDBbind422aa, >5JMW_1|Chains... at 100%
5jnlRCSB PDB    PDBbind422aa, >5JNL_1|Chains... at 100%
5jo0RCSB PDB    PDBbind422aa, >5JO0_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4y6p
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePlasmodium falciparum DXR
Ligand NameR77
EC.Number E.C.1.1.1.267
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)IC50=0.069uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 2988-3001
Ligand Properties
Formula C15H25NO5P
Molecular Weight 330.336
Exact Mass 330.147
No. of atoms 47
No. of bonds 47
Polar Surface Area 114.82
LOGP Value 0.83      (Computed with XLOGP3)
1.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8IKG4  
Entrez Gene IDNCBI Entrez Gene ID: 812223  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com