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Related entries of code: 4ymx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1lafRCSB PDB    PDBbindARG
2q2aRCSB PDB    PDBbindARG
2y7iRCSB PDB    PDBbindARG
3zzhRCSB PDB    PDBbindARG
4pshRCSB PDB    PDBbindARG
4usjRCSB PDB    PDBbindARG
4zv1RCSB PDB    PDBbindARG
5gs9RCSB PDB    PDBbindARG
6f34RCSB PDB    PDBbindARG
6ggvRCSB PDB    PDBbindARG
6mj7RCSB PDB    PDBbindARG
6mlpRCSB PDB    PDBbindARG
6mloRCSB PDB    PDBbindARG
6mlnRCSB PDB    PDBbindARG
6mljRCSB PDB    PDBbindARG
6mliRCSB PDB    PDBbindARG
6mlgRCSB PDB    PDBbindARG
6mleRCSB PDB    PDBbindARG
6ml9RCSB PDB    PDBbindARG
6mlaRCSB PDB    PDBbindARG
6mkuRCSB PDB    PDBbindARG
6iotRCSB PDB    PDBbindARG
6detRCSB PDB    PDBbindARG
5lt9RCSB PDB    PDBbindARG
5gv2RCSB PDB    PDBbindARG
Entry Information
PDB ID4ymx
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameABC-type amino acid transport system, periplasmic component
Ligand NameARG
EC.Number E.C.-.-.-.-
Resolution 1.48(Å)
Affinity (Kd/Ki/IC50)Kd=79nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Proc.Natl.Acad.Sci.USA Vol. 112: pp. 5243-5248
Ligand Properties
Formula C6H16N4O2
Molecular Weight 176.217
Exact Mass 176.127
No. of atoms 28
No. of bonds 27
Polar Surface Area 130.95
LOGP Value -1.21      (Computed with XLOGP3)
-2.78      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8RCC4  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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