Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5agr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5agsRCSB PDB    PDBbind232aa, >5AGS_1|Chain... at 100%
5agtRCSB PDB    PDBbind232aa, >5AGT_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5agr
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLeuRS editing domain of Mycobacterium tuberculosis
Ligand NameA52
EC.Number E.C.6.1.1.4
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)Kd=3.7uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Antimicrob.Agents Chemother. Vol. 60: pp. 6271-6280
Ligand Properties
Formula C20H27BN6O9P
Molecular Weight 537.248
Exact Mass 537.167
No. of atoms 64
No. of bonds 69
Polar Surface Area 226.92
LOGP Value -4.11      (Computed with XLOGP3)
-1.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 15
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WFV1  
Entrez Gene IDNCBI Entrez Gene ID: 45424000  887040  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com