Browse entries in the PDBbind-CN Database

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Related entries of code: 5amn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ivuRCSB PDB    PDBbind314aa, >2IVU_1|Chain... *
2x2kRCSB PDB    PDBbind314aa, >2X2K_1|Chain... at 100%
2x2lRCSB PDB    PDBbind314aa, >2X2L_1|Chain... at 100%
2x2mRCSB PDB    PDBbind314aa, >2X2M_1|Chains... at 100%
4ckiRCSB PDB    PDBbind314aa, >4CKI_1|Chain... at 99%
4ckjRCSB PDB    PDBbind314aa, >4CKJ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1di8RCSB PDB    PDBbindDTQ
4btkRCSB PDB    PDBbindDTQ

Entry Information
PDB ID5amn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameReceptor tyrosine kinase RET
Ligand NameDTQ
EC.Number E.C.2.7.10.1
Resolution 2.57(Å)
Affinity (Kd/Ki/IC50)IC50=4.5nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Eur.J.Med.Chem. Vol. 112: pp. 20-32
Ligand Properties
Formula C16H15N3O3
Molecular Weight 297.309
Exact Mass 297.111
No. of atoms 37
No. of bonds 39
Polar Surface Area 76.5
LOGP Value 3.00      (Computed with XLOGP3)
3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P07949  
Entrez Gene IDNCBI Entrez Gene ID: 5979  
ASDInformation of known allosteric effects of PDB entries

 
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