Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5bv3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3m93RCSB PDB    PDBbindM7G
4b6uRCSB PDB    PDBbindM7G
4emfRCSB PDB    PDBbindM7G
4or4RCSB PDB    PDBbindM7G

Entry Information
PDB ID5bv3
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameYeast Scavenger Decapping Enzyme H268N mutant
Ligand NameM7G
EC.Number E.C.3.6.1.59
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)Kd=68nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Nat.Chem.Biol. Vol. 11: pp. 697-704
Ligand Properties
Formula C11H21N5O11P2
Molecular Weight 461.259
Exact Mass 461.071
No. of atoms 50
No. of bonds 52
Polar Surface Area 279.36
LOGP Value -4.30      (Computed with XLOGP3)
-3.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q06151  
Entrez Gene IDNCBI Entrez Gene ID: 850974  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com