Browse entries in the PDBbind-CN Database

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Related entries of code: 5c3k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1g3fRCSB PDB    PDBbind117aa, >1G3F_1|Chain... at 99%
1nw9RCSB PDB    PDBbind98aa, >1NW9_1|Chain... at 100%
1tfqRCSB PDB    PDBbind117aa, >1TFQ_1|Chain... at 99%
1tftRCSB PDB    PDBbind117aa, >1TFT_1|Chain... at 99%
2jk7RCSB PDB    PDBbind116aa, >2JK7_1|Chain... at 100%
2opyRCSB PDB    PDBbind106aa, >2OPY_1|Chain... at 100%
2vslRCSB PDB    PDBbind96aa, >2VSL_1|Chain... at 100%
3cm2RCSB PDB    PDBbind130aa, >3CM2_1|Chains... *
3cm7RCSB PDB    PDBbind130aa, >3CM7_1|Chains... at 100%
3eylRCSB PDB    PDBbind122aa, >3EYL_1|Chains... at 95%
3g76RCSB PDB    PDBbind122aa, >3G76_1|Chains... at 95%
3hl5RCSB PDB    PDBbind95aa, >3HL5_1|Chains... at 95%
4ec4RCSB PDB    PDBbind122aa, >4EC4_1|Chains... at 95%
4hy0RCSB PDB    PDBbind125aa, >4HY0_1|Chains... at 93%
5c0kRCSB PDB    PDBbind110aa, >5C0K_1|Chain... at 97%
5c7aRCSB PDB    PDBbind110aa, >5C7A_1|Chain... at 97%
5c7bRCSB PDB    PDBbind110aa, >5C7B_1|Chain... at 97%
5c7cRCSB PDB    PDBbind110aa, >5C7C_1|Chain... at 97%
5c7dRCSB PDB    PDBbind110aa, >5C7D_1|Chain... at 97%
5c83RCSB PDB    PDBbind110aa, >5C83_1|Chain... at 97%
5c84RCSB PDB    PDBbind110aa, >5C84_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5c3k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE3 ubiquitin-protein ligase XIAP
Ligand Name4XF
EC.Number E.C.6.3.2.-
Resolution 2.02(Å)
Affinity (Kd/Ki/IC50)IC50=110uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 6574-6588
Ligand Properties
Formula C8H13N4O
Molecular Weight 181.215
Exact Mass 181.109
No. of atoms 26
No. of bonds 26
Polar Surface Area 95.65
LOGP Value -0.49      (Computed with XLOGP3)
-0.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P98170  
Entrez Gene IDNCBI Entrez Gene ID: 331  
ASDInformation of known allosteric effects of PDB entries
 
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