Browse entries in the PDBbind-CN Database

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Related entries of code: 5c4l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4dfbRCSB PDB    PDBbind322aa, >4DFB_1|Chains... *
4dfuRCSB PDB    PDBbind322aa, >4DFU_1|Chains... at 100%
5c4kRCSB PDB    PDBbind321aa, >5C4K_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6np2RCSB PDB    PDBbindSIS

Entry Information
PDB ID5c4l
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAminoglycoside phosphotransferases
Ligand NameSIS
EC.Number E.C.-.-.-.-
Resolution 2.35(Å)
Affinity (Kd/Ki/IC50)Kd=2.3uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochim.Biophys.Acta Vol. 1860: pp. 802-813
Ligand Properties
Formula C19H42N5O7
Molecular Weight 452.566
Exact Mass 452.308
No. of atoms 73
No. of bonds 75
Polar Surface Area 224.78
LOGP Value -5.36      (Computed with XLOGP3)
-8.09      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O68183  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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