Browse entries in the PDBbind-CN Database

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Related entries of code: 5cbm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3kr4RCSB PDB    PDBbind528aa, >3KR4_1|Chains... *
3kr5RCSB PDB    PDBbind528aa, >3KR5_1|Chains... at 100%
3t8wRCSB PDB    PDBbind528aa, >3T8W_1|Chains... at 100%
4k3nRCSB PDB    PDBbind528aa, >4K3N_1|Chains... at 100%
4r6tRCSB PDB    PDBbind528aa, >4R6T_1|Chains... at 100%
4r76RCSB PDB    PDBbind528aa, >4R76_1|Chains... at 100%
4r7mRCSB PDB    PDBbind528aa, >4R7M_1|Chains... at 100%
4zx8RCSB PDB    PDBbind522aa, >4ZX8_1|Chains... at 99%
4zx9RCSB PDB    PDBbind522aa, >4ZX9_1|Chains... at 99%
4zy0RCSB PDB    PDBbind522aa, >4ZY0_1|Chains... at 99%
4zy1RCSB PDB    PDBbind522aa, >4ZY1_1|Chains... at 99%
4zy2RCSB PDB    PDBbind522aa, >4ZY2_1|Chains... at 99%
4zyqRCSB PDB    PDBbind522aa, >4ZYQ_1|Chains... at 99%
6ee2RCSB PDB    PDBbind526aa, >6EE2_1|Chains... at 100%
6eeeRCSB PDB    PDBbind519aa, >6EEE_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5cbm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameM17 family aminopeptidase, PfA-M17
Ligand Name4ZN
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=17nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Plos One Vol. 10: pp. 1-16
Ligand Properties
Formula C10H16NO4P
Molecular Weight 245.212
Exact Mass 245.082
No. of atoms 32
No. of bonds 32
Polar Surface Area 118.99
LOGP Value -1.85      (Computed with XLOGP3)
0.23      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A024V0B1  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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