Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5d1n
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5bw4RCSB PDB    PDBbind267aa, >5BW4_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1aqiRCSB PDB    PDBbindSAH
1jqdRCSB PDB    PDBbindSAH
1nw7RCSB PDB    PDBbindSAH
1qanRCSB PDB    PDBbindSAH
1s4dRCSB PDB    PDBbindSAH
2a14RCSB PDB    PDBbindSAH
2h23RCSB PDB    PDBbindSAH
2qbuRCSB PDB    PDBbindSAH
2wr8RCSB PDB    PDBbindSAH
3lcuRCSB PDB    PDBbindSAH
3lgsRCSB PDB    PDBbindSAH
3p2eRCSB PDB    PDBbindSAH
3pb3RCSB PDB    PDBbindSAH
3qoxRCSB PDB    PDBbindSAH
3u81RCSB PDB    PDBbindSAH
3ujbRCSB PDB    PDBbindSAH
4au7RCSB PDB    PDBbindSAH
4jalRCSB PDB    PDBbindSAH
4pynRCSB PDB    PDBbindSAH
4pyoRCSB PDB    PDBbindSAH
4qdkRCSB PDB    PDBbindSAH
4r6wRCSB PDB    PDBbindSAH
4r6xRCSB PDB    PDBbindSAH
4xboRCSB PDB    PDBbindSAH
4ymhRCSB PDB    PDBbindSAH
5a7yRCSB PDB    PDBbindSAH
5f2kRCSB PDB    PDBbindSAH
5fulRCSB PDB    PDBbindSAH
5wp5RCSB PDB    PDBbindSAH
5x62RCSB PDB    PDBbindSAH
5zu0RCSB PDB    PDBbindSAH
5zzwRCSB PDB    PDBbindSAH
6bm6RCSB PDB    PDBbindSAH
6mjfRCSB PDB    PDBbindSAH
6qe5RCSB PDB    PDBbindSAH
5zhjRCSB PDB    PDBbindSAH
5gutRCSB PDB    PDBbindSAH
6h1dRCSB PDB    PDBbindSAH
Entry Information
PDB ID5d1n
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name16S rRNA (adenine(1408)-N(1))-methyltransferase
Ligand NameSAH
EC.Number E.C.-.-.-.-
Resolution 2.71(Å)
Affinity (Kd/Ki/IC50)Kd=2.7uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nucleic Acids Res. Vol. 44: pp. 342-353
Ligand Properties
Formula C14H21N6O5S
Molecular Weight 385.419
Exact Mass 385.129
No. of atoms 47
No. of bonds 49
Polar Surface Area 209.55
LOGP Value -3.47      (Computed with XLOGP3)
-1.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): C7Q5P8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com