Browse entries in the PDBbind-CN Database

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Related entries of code: 5d3j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yelRCSB PDB    PDBbind127aa, >2YEL_1|Chain... at 98%
2yemRCSB PDB    PDBbind130aa, >2YEM_1|Chains... at 98%
3jvkRCSB PDB    PDBbind131aa, >3JVK_1|Chain... at 95%
3mukRCSB PDB    PDBbind131aa, >3MUK_1|Chain... at 95%
3mxfRCSB PDB    PDBbind127aa, >3MXF_1|Chain... at 98%
3p5oRCSB PDB    PDBbind127aa, >3P5O_1|Chain... at 98%
3u5jRCSB PDB    PDBbind127aa, >3U5J_1|Chain... at 98%
3u5lRCSB PDB    PDBbind127aa, >3U5L_1|Chain... at 98%
3zyuRCSB PDB    PDBbind127aa, >3ZYU_1|Chains... at 98%
4bw1RCSB PDB    PDBbind127aa, >4BW1_1|Chain... at 98%
4bw2RCSB PDB    PDBbind127aa, >4BW2_1|Chain... at 98%
4bw3RCSB PDB    PDBbind127aa, >4BW3_1|Chain... at 98%
4bw4RCSB PDB    PDBbind127aa, >4BW4_1|Chain... at 98%
4c66RCSB PDB    PDBbind126aa, >4C66_1|Chain... at 98%
4cflRCSB PDB    PDBbind127aa, >4CFL_1|Chain... at 98%
4cl9RCSB PDB    PDBbind127aa, >4CL9_1|Chain... at 98%
4clbRCSB PDB    PDBbind127aa, >4CLB_1|Chain... at 98%
4e96RCSB PDB    PDBbind127aa, >4E96_1|Chain... at 98%
4f3iRCSB PDB    PDBbind127aa, >4F3I_1|Chain... at 98%
4hbvRCSB PDB    PDBbind127aa, >4HBV_1|Chain... at 98%
4hbwRCSB PDB    PDBbind127aa, >4HBW_1|Chain... at 97%
4hbxRCSB PDB    PDBbind127aa, >4HBX_1|Chain... at 98%
4hbyRCSB PDB    PDBbind127aa, >4HBY_1|Chain... at 98%
4hxlRCSB PDB    PDBbind125aa, >4HXL_1|Chain... at 99%
4hxmRCSB PDB    PDBbind124aa, >4HXM_1|Chain... at 99%
4hxrRCSB PDB    PDBbind125aa, >4HXR_1|Chain... at 99%
4hxsRCSB PDB    PDBbind124aa, >4HXS_1|Chain... at 99%
4j0rRCSB PDB    PDBbind127aa, >4J0R_1|Chain... at 98%
4j0sRCSB PDB    PDBbind127aa, >4J0S_1|Chain... at 98%
4j3iRCSB PDB    PDBbind127aa, >4J3I_1|Chain... at 98%
4lysRCSB PDB    PDBbind126aa, >4LYS_1|Chain... at 99%
4lywRCSB PDB    PDBbind127aa, >4LYW_1|Chain... at 98%
4lzrRCSB PDB    PDBbind127aa, >4LZR_1|Chain... at 96%
4lzsRCSB PDB    PDBbind127aa, >4LZS_1|Chain... at 98%
4menRCSB PDB    PDBbind127aa, >4MEN_1|Chain... at 98%
4meoRCSB PDB    PDBbind127aa, >4MEO_1|Chain... at 98%
4mepRCSB PDB    PDBbind127aa, >4MEP_1|Chain... at 98%
4meqRCSB PDB    PDBbind127aa, >4MEQ_1|Chain... at 98%
4mr3RCSB PDB    PDBbind127aa, >4MR3_1|Chain... at 98%
4mr4RCSB PDB    PDBbind127aa, >4MR4_1|Chain... at 98%
4nucRCSB PDB    PDBbind127aa, >4NUC_1|Chain... at 98%
4nudRCSB PDB    PDBbind127aa, >4NUD_1|Chain... at 98%
4nueRCSB PDB    PDBbind127aa, >4NUE_1|Chain... at 98%
4o70RCSB PDB    PDBbind127aa, >4O70_1|Chains... at 98%
4o71RCSB PDB    PDBbind127aa, >4O71_1|Chains... at 98%
4o72RCSB PDB    PDBbind127aa, >4O72_1|Chain... at 98%
4o74RCSB PDB    PDBbind127aa, >4O74_1|Chains... at 98%
4o75RCSB PDB    PDBbind127aa, >4O75_1|Chain... at 98%
4o76RCSB PDB    PDBbind127aa, >4O76_1|Chains... at 98%
4o77RCSB PDB    PDBbind127aa, >4O77_1|Chains... at 98%
4o78RCSB PDB    PDBbind127aa, >4O78_1|Chain... at 98%
4o7aRCSB PDB    PDBbind127aa, >4O7A_1|Chain... at 98%
4o7bRCSB PDB    PDBbind127aa, >4O7B_1|Chain... at 98%
4o7cRCSB PDB    PDBbind127aa, >4O7C_1|Chain... at 98%
4o7eRCSB PDB    PDBbind127aa, >4O7E_1|Chains... at 98%
4o7fRCSB PDB    PDBbind127aa, >4O7F_1|Chains... at 98%
4ogiRCSB PDB    PDBbind127aa, >4OGI_1|Chains... at 98%
4ogjRCSB PDB    PDBbind127aa, >4OGJ_1|Chains... at 98%
4pceRCSB PDB    PDBbind127aa, >4PCE_1|Chain... at 98%
4pciRCSB PDB    PDBbind127aa, >4PCI_1|Chain... at 98%
4ps5RCSB PDB    PDBbind127aa, >4PS5_1|Chains... at 98%
4qb3RCSB PDB    PDBbind127aa, >4QB3_1|Chain... at 98%
4qr3RCSB PDB    PDBbind125aa, >4QR3_1|Chain... at 98%
4qr4RCSB PDB    PDBbind125aa, >4QR4_1|Chain... at 98%
4qr5RCSB PDB    PDBbind125aa, >4QR5_1|Chain... at 98%
4qzsRCSB PDB    PDBbind127aa, >4QZS_1|Chain... at 98%
4uixRCSB PDB    PDBbind127aa, >4UIX_1|Chains... at 97%
4uiyRCSB PDB    PDBbind127aa, >4UIY_1|Chain... at 98%
4uizRCSB PDB    PDBbind127aa, >4UIZ_1|Chain... at 98%
4uydRCSB PDB    PDBbind153aa, >4UYD_1|Chain... at 91%
4wivRCSB PDB    PDBbind127aa, >4WIV_1|Chain... at 98%
4x2iRCSB PDB    PDBbind126aa, >4X2I_1|Chain... at 97%
4xy9RCSB PDB    PDBbind127aa, >4XY9_1|Chain... at 98%
4xyaRCSB PDB    PDBbind127aa, >4XYA_1|Chain... at 98%
4yh3RCSB PDB    PDBbind129aa, >4YH3_1|Chain... at 98%
4yh4RCSB PDB    PDBbind129aa, >4YH4_1|Chain... at 98%
4z1qRCSB PDB    PDBbind127aa, >4Z1Q_1|Chains... at 97%
4z1sRCSB PDB    PDBbind126aa, >4Z1S_1|Chains... at 97%
4z93RCSB PDB    PDBbind112aa, >4Z93_1|Chain... at 100%
5a5sRCSB PDB    PDBbind127aa, >5A5S_1|Chain... at 97%
5a85RCSB PDB    PDBbind127aa, >5A85_1|Chain... at 98%
5acyRCSB PDB    PDBbind127aa, >5ACY_1|Chains... at 98%
5d24RCSB PDB    PDBbind126aa, >5D24_1|Chain... at 99%
5d25RCSB PDB    PDBbind126aa, >5D25_1|Chain... at 99%
5d26RCSB PDB    PDBbind127aa, >5D26_1|Chain... at 98%
5d3hRCSB PDB    PDBbind126aa, >5D3H_1|Chain... at 99%
5d3lRCSB PDB    PDBbind127aa, >5D3L_1|Chain... at 98%
5d3nRCSB PDB    PDBbind126aa, >5D3N_1|Chain... at 99%
5d3pRCSB PDB    PDBbind127aa, >5D3P_1|Chain... at 98%
5d3sRCSB PDB    PDBbind126aa, >5D3S_1|Chain... at 99%
5d3tRCSB PDB    PDBbind127aa, >5D3T_1|Chain... at 98%
5dlxRCSB PDB    PDBbind127aa, >5DLX_1|Chain... at 98%
5dlzRCSB PDB    PDBbind127aa, >5DLZ_1|Chain... at 98%
5dw2RCSB PDB    PDBbind129aa, >5DW2_1|Chain... at 98%
5dx4RCSB PDB    PDBbind127aa, >5DX4_1|Chain... at 98%
5eguRCSB PDB    PDBbind127aa, >5EGU_1|Chains... at 98%
5ei4RCSB PDB    PDBbind127aa, >5EI4_1|Chain... at 98%
5eisRCSB PDB    PDBbind127aa, >5EIS_1|Chain... at 98%
5f5zRCSB PDB    PDBbind127aa, >5F5Z_1|Chain... at 98%
5f60RCSB PDB    PDBbind127aa, >5F60_1|Chain... at 98%
5f61RCSB PDB    PDBbind127aa, >5F61_1|Chains... at 98%
5f62RCSB PDB    PDBbind127aa, >5F62_1|Chain... at 98%
5f63RCSB PDB    PDBbind127aa, >5F63_1|Chain... at 98%
5hclRCSB PDB    PDBbind127aa, >5HCL_1|Chain... at 98%
5hlsRCSB PDB    PDBbind128aa, >5HLS_1|Chain... at 97%
5hm0RCSB PDB    PDBbind128aa, >5HM0_1|Chain... at 97%
5i80RCSB PDB    PDBbind126aa, >5I80_1|Chain... at 98%
5i88RCSB PDB    PDBbind126aa, >5I88_1|Chain... at 98%
5igkRCSB PDB    PDBbind127aa, >5IGK_1|Chain... at 98%
5khmRCSB PDB    PDBbind127aa, >5KHM_1|Chains... at 98%
5kj0RCSB PDB    PDBbind127aa, >5KJ0_1|Chain... at 98%
5ku3RCSB PDB    PDBbind126aa, >5KU3_1|Chain... at 98%
5lj1RCSB PDB    PDBbind127aa, >5LJ1_1|Chain... at 98%
5lj2RCSB PDB    PDBbind127aa, >5LJ2_1|Chain... at 98%
5luuRCSB PDB    PDBbind127aa, >5LUU_1|Chain... at 98%
5m39RCSB PDB    PDBbind127aa, >5M39_1|Chains... at 98%
5m3aRCSB PDB    PDBbind127aa, >5M3A_1|Chain... at 98%
5mkzRCSB PDB    PDBbind127aa, >5MKZ_1|Chain... at 98%
5mliRCSB PDB    PDBbind127aa, >5MLI_1|Chain... at 98%
5ti2RCSB PDB    PDBbind127aa, >5TI2_1|Chain... at 98%
5ti3RCSB PDB    PDBbind127aa, >5TI3_1|Chain... at 98%
5ti4RCSB PDB    PDBbind127aa, >5TI4_1|Chain... at 98%
5ti5RCSB PDB    PDBbind127aa, >5TI5_1|Chain... at 98%
5ti6RCSB PDB    PDBbind127aa, >5TI6_1|Chain... at 98%
5ti7RCSB PDB    PDBbind127aa, >5TI7_1|Chain... at 98%
5u28RCSB PDB    PDBbind138aa, >5U28_1|Chain... at 99%
5u2cRCSB PDB    PDBbind124aa, >5U2C_1|Chains... at 95%
5u2eRCSB PDB    PDBbind140aa, >5U2E_1|Chains... at 97%
5u2fRCSB PDB    PDBbind140aa, >5U2F_1|Chains... at 97%
5ueuRCSB PDB    PDBbind109aa, >5UEU_1|Chains... at 97%
5uexRCSB PDB    PDBbind109aa, >5UEX_1|Chain... at 97%
5ueyRCSB PDB    PDBbind109aa, >5UEY_1|Chain... at 97%
5uezRCSB PDB    PDBbind109aa, >5UEZ_1|Chain... at 97%
5uf0RCSB PDB    PDBbind109aa, >5UF0_1|Chain... at 97%
5ulaRCSB PDB    PDBbind127aa, >5ULA_1|Chains... at 98%
5uooRCSB PDB    PDBbind131aa, >5UOO_1|Chain... at 97%
5y1yRCSB PDB    PDBbind125aa, >5Y1Y_1|Chain... at 99%
6afrRCSB PDB    PDBbind127aa, >6AFR_1|Chain... at 98%
6boyRCSB PDB    PDBbind127aa, >6BOY_3|Chain... at 98%
6c7qRCSB PDB    PDBbind131aa, >6C7Q_1|Chain... at 97%
6c7rRCSB PDB    PDBbind125aa, >6C7R_1|Chain... at 97%
6cd4RCSB PDB    PDBbind127aa, >6CD4_1|Chain... at 98%
6cisRCSB PDB    PDBbind125aa, >6CIS_1|Chain... at 98%
6ciyRCSB PDB    PDBbind127aa, >6CIY_1|Chain... at 98%
6cj1RCSB PDB    PDBbind125aa, >6CJ1_1|Chain... at 98%
6ckrRCSB PDB    PDBbind126aa, >6CKR_1|Chains... at 99%
6cksRCSB PDB    PDBbind126aa, >6CKS_1|Chain... at 99%
6czuRCSB PDB    PDBbind129aa, >6CZU_1|Chain... at 98%
6czvRCSB PDB    PDBbind129aa, >6CZV_1|Chain... at 98%
6djcRCSB PDB    PDBbind132aa, >6DJC_1|Chains... at 98%
6dneRCSB PDB    PDBbind434aa, >6DNE_1|Chains... *
6e4aRCSB PDB    PDBbind129aa, >6E4A_1|Chains... at 98%
6fnxRCSB PDB    PDBbind127aa, >6FNX_1|Chain... at 98%
6fo5RCSB PDB    PDBbind127aa, >6FO5_1|Chain... at 98%
6hdqRCSB PDB    PDBbind127aa, >6HDQ_1|Chain... at 98%
6q3zRCSB PDB    PDBbind127aa, >6Q3Z_1|Chains... at 98%
6q3yRCSB PDB    PDBbind127aa, >6Q3Y_1|Chains... at 98%
6psbRCSB PDB    PDBbind126aa, >6PSB_1|Chain... at 99%
6ps9RCSB PDB    PDBbind126aa, >6PS9_1|Chain... at 99%
6prtRCSB PDB    PDBbind126aa, >6PRT_1|Chain... at 99%
6mh7RCSB PDB    PDBbind127aa, >6MH7_1|Chains... at 98%
6mh1RCSB PDB    PDBbind127aa, >6MH1_1|Chains... at 98%
6hovRCSB PDB    PDBbind127aa, >6HOV_1|Chain... at 98%
6ft4RCSB PDB    PDBbind127aa, >6FT4_1|Chain... at 98%
6ft3RCSB PDB    PDBbind127aa, >6FT3_1|Chain... at 98%
6fsyRCSB PDB    PDBbind127aa, >6FSY_1|Chain... at 98%
6dl2RCSB PDB    PDBbind128aa, >6DL2_1|Chain... at 97%
6cd5RCSB PDB    PDBbind127aa, >6CD5_1|Chain... at 98%
6ajzRCSB PDB    PDBbind135aa, >6AJZ_1|Chain... at 92%
6ajyRCSB PDB    PDBbind135aa, >6AJY_1|Chain... at 92%
6ajxRCSB PDB    PDBbind135aa, >6AJX_1|Chain... at 92%
5z5vRCSB PDB    PDBbind125aa, >5Z5V_1|Chain... at 99%
5yovRCSB PDB    PDBbind127aa, >5YOV_1|Chain... at 98%
5wmgRCSB PDB    PDBbind127aa, >5WMG_1|Chain... at 97%
5wa5RCSB PDB    PDBbind127aa, >5WA5_1|Chain... at 98%
6ajvRCSB PDB    PDBbind135aa, >6AJV_1|Chain... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5d3j
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameFirst bromodomain of BRD4, BRD4(1)
Ligand NameL33
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=5.7uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 1518-1530
Ligand Properties
Formula C20H27N3O4S
Molecular Weight 405.511
Exact Mass 405.172
No. of atoms 55
No. of bonds 56
Polar Surface Area 107.72
LOGP Value 2.64      (Computed with XLOGP3)
4.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O60885  
Entrez Gene IDNCBI Entrez Gene ID: 23476  
ASDInformation of known allosteric effects of PDB entries
 
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