Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5d6e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1r58RCSB PDB    PDBbind369aa, >1R58_1|Chain... at 99%
1r5gRCSB PDB    PDBbind369aa, >1R5G_1|Chain... at 99%
1r5hRCSB PDB    PDBbind369aa, >1R5H_1|Chain... at 99%
1yw7RCSB PDB    PDBbind369aa, >1YW7_1|Chain... at 99%
1yw8RCSB PDB    PDBbind369aa, >1YW8_1|Chain... at 99%
2aduRCSB PDB    PDBbind369aa, >2ADU_1|Chain... at 99%
2ea2RCSB PDB    PDBbind369aa, >2EA2_1|Chain... at 99%
2ea4RCSB PDB    PDBbind369aa, >2EA4_1|Chain... at 99%
2ga2RCSB PDB    PDBbind369aa, >2GA2_1|Chain... at 99%
2oazRCSB PDB    PDBbind369aa, >2OAZ_1|Chain... at 99%
5clsRCSB PDB    PDBbind371aa, >5CLS_1|Chain... at 100%
5d6fRCSB PDB    PDBbind371aa, >5D6F_1|Chain... at 100%
5jfrRCSB PDB    PDBbind369aa, >5JFR_1|Chain... at 100%
5ji6RCSB PDB    PDBbind369aa, >5JI6_1|Chain... at 100%
5lywRCSB PDB    PDBbind378aa, >5LYW_1|Chain... *
5lyxRCSB PDB    PDBbind378aa, >5LYX_1|Chain... at 100%
6qefRCSB PDB    PDBbind378aa, >6QEF_1|Chain... at 100%
6qedRCSB PDB    PDBbind378aa, >6QED_1|Chain... at 100%
6qegRCSB PDB    PDBbind378aa, >6QEG_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5d6e
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman methionine aminopeptidase-2
Ligand Name94A
EC.Number E.C.3.4.11.18
Resolution 1.49(Å)
Affinity (Kd/Ki/IC50)IC50>50uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Acs Chem.Biol. Vol. 11: pp. 1001-1011
Ligand Properties
Formula C19H26N4O4
Molecular Weight 374.434
Exact Mass 374.195
No. of atoms 53
No. of bonds 55
Polar Surface Area 98.5
LOGP Value 1.50      (Computed with XLOGP3)
2.90      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P50579  
Entrez Gene IDNCBI Entrez Gene ID: 10988  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com