Browse entries in the PDBbind-CN Database

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Related entries of code: 5d9p
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2prjRCSB PDB    PDBbindNBG
Entry Information
PDB ID5d9p
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14
Ligand NameNBG
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.63mM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Biol.Chem.1175-1197
Ligand Properties
Formula C8H15NO6
Molecular Weight 221.208
Exact Mass 221.090
No. of atoms 30
No. of bonds 30
Polar Surface Area 119.25
LOGP Value -2.59      (Computed with XLOGP3)
-2.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O06842  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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