Browse entries in the PDBbind-CN Database

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Related entries of code: 5dp6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3qzqRCSB PDB    PDBbind187aa, >3QZQ_1|Chains... at 99%
3sjiRCSB PDB    PDBbind190aa, >3SJI_1|Chain... at 91%
3sjoRCSB PDB    PDBbind190aa, >3SJO_1|Chains... at 95%
4ghtRCSB PDB    PDBbind192aa, >4GHT_1|Chains... at 94%
5c1xRCSB PDB    PDBbind192aa, >5C1X_1|Chains... at 94%
5c1yRCSB PDB    PDBbind192aa, >5C1Y_1|Chain... at 94%
5c20RCSB PDB    PDBbind192aa, >5C20_1|Chain... at 94%
5dp4RCSB PDB    PDBbind192aa, >5DP4_1|Chains... at 94%
5dp5RCSB PDB    PDBbind181aa, >5DP5_1|Chain... at 98%
5dp7RCSB PDB    PDBbind192aa, >5DP7_1|Chain... at 94%
5dp8RCSB PDB    PDBbind192aa, >5DP8_1|Chain... at 94%
5dp9RCSB PDB    PDBbind192aa, >5DP9_1|Chain... at 94%
5dpaRCSB PDB    PDBbind192aa, >5DPA_1|Chain... at 94%
5gsoRCSB PDB    PDBbind204aa, >5GSO_1|Chains... *
5gswRCSB PDB    PDBbind183aa, >5GSW_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5dp6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEV71 3C Proteinase
Ligand Name5EB
EC.Number E.C.-.-.-.-
Resolution 3.01(Å)
Affinity (Kd/Ki/IC50)IC50=14.71uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochim.Biophys.Acta Vol. 1860: pp. 1299-1307
Ligand Properties
Formula C26H37N3O5
Molecular Weight 471.589
Exact Mass 471.273
No. of atoms 71
No. of bonds 73
Polar Surface Area 113.6
LOGP Value 2.67      (Computed with XLOGP3)
3.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 17
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A9XG43  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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