Browse entries in the PDBbind-CN Database

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Related entries of code: 5dyo
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1flrRCSB PDB    PDBbindFLU
1n0sRCSB PDB    PDBbindFLU
4fabRCSB PDB    PDBbindFLU
4zs2RCSB PDB    PDBbindFLU

Entry Information
PDB ID5dyo
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamemAb Fab 43.1
Ligand NameFLU
EC.Number E.C.-.-.-.-
Resolution 2.36(Å)
Affinity (Kd/Ki/IC50)Kd=61pM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biopolymers Vol. 105: pp. 234-243
Ligand Properties
Formula C20H12O5
Molecular Weight 332.306
Exact Mass 332.068
No. of atoms 37
No. of bonds 40
Polar Surface Area 87.74
LOGP Value 3.53      (Computed with XLOGP3)
3.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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