Browse entries in the PDBbind-CN Database

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Related entries of code: 5eb3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5eb2RCSB PDB    PDBbind159aa, >5EB2_1|Chains... at 100%
5y62RCSB PDB    PDBbind159aa, >5Y62_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5eb3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameYfiR
Ligand NameUEG
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=35.2mM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Protein Cell Vol. 7: pp. 403-416
Ligand Properties
Formula C8H11NO3
Molecular Weight 169.178
Exact Mass 169.074
No. of atoms 23
No. of bonds 23
Polar Surface Area 73.58
LOGP Value -0.32      (Computed with XLOGP3)
0.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9I4L4  
Entrez Gene IDNCBI Entrez Gene ID: 877671  
ASDInformation of known allosteric effects of PDB entries

 
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