Browse entries in the PDBbind-CN Database

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Related entries of code: 5edb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1adlRCSB PDB    PDBbind131aa, >1ADL_1|Chain... at 100%
1g74RCSB PDB    PDBbind131aa, >1G74_1|Chain... at 97%
1touRCSB PDB    PDBbind131aa, >1TOU_1|Chain... at 91%
1towRCSB PDB    PDBbind131aa, >1TOW_1|Chain... at 91%
2ansRCSB PDB    PDBbind131aa, >2ANS_1|Chains... at 100%
2nnqRCSB PDB    PDBbind131aa, >2NNQ_1|Chain... at 91%
2qm9RCSB PDB    PDBbind155aa, >2QM9_1|Chains... *
3fr2RCSB PDB    PDBbind131aa, >3FR2_1|Chain... at 91%
3fr4RCSB PDB    PDBbind132aa, >3FR4_1|Chain... at 91%
3fr5RCSB PDB    PDBbind131aa, >3FR5_1|Chain... at 91%
3hk1RCSB PDB    PDBbind131aa, >3HK1_1|Chain... at 100%
5c0nRCSB PDB    PDBbind132aa, >5C0N_1|Chains... at 100%
5d8jRCSB PDB    PDBbind134aa, >5D8J_1|Chain... at 98%
5edcRCSB PDB    PDBbind133aa, >5EDC_1|Chain... at 90%
5hz6RCSB PDB    PDBbind131aa, >5HZ6_1|Chain... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5hz9RCSB PDB    PDBbind5M8
Entry Information
PDB ID5edb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman fatty acid binding protein 4 (FABP4)
Ligand Name5M8
EC.Number E.C.-.-.-.-
Resolution 1.18(Å)
Affinity (Kd/Ki/IC50)Ki=0.1uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 4087-4102
Ligand Properties
Formula C17H12ClNO2
Molecular Weight 297.736
Exact Mass 297.056
No. of atoms 33
No. of bonds 35
Polar Surface Area 50.19
LOGP Value 5.45      (Computed with XLOGP3)
4.56      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P15090  
Entrez Gene IDNCBI Entrez Gene ID: 2167  
ASDInformation of known allosteric effects of PDB entries
 
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