Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5efa
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4or4RCSB PDB    PDBbind169aa, >4OR4_1|Chains... at 95%
4or6RCSB PDB    PDBbind169aa, >4OR6_1|Chains... at 95%
4q46RCSB PDB    PDBbind171aa, >4Q46_1|Chains... at 96%
5efcRCSB PDB    PDBbind174aa, >5EFC_1|Chain... at 91%
6euxRCSB PDB    PDBbind292aa, >6EUX_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6qhgRCSB PDB    PDBbindMGT

Entry Information
PDB ID5efa
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameInfluenza B Lee PB2 cap-binding domain
Ligand NameMGT
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=14.7uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Biol.Chem. Vol. 291: pp. 363-370
Ligand Properties
Formula C11H23N5O14P3
Molecular Weight 542.247
Exact Mass 542.045
No. of atoms 56
No. of bonds 58
Polar Surface Area 342.64
LOGP Value -5.48      (Computed with XLOGP3)
-3.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9QLL6  
Entrez Gene IDNCBI Entrez Gene ID: 956546  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com