Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5evb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2fu8RCSB PDB    PDBbind269aa, >2FU8_1|Chains... at 100%
2gfjRCSB PDB    PDBbind269aa, >2GFJ_1|Chains... at 100%
2gfkRCSB PDB    PDBbind269aa, >2GFK_1|Chains... at 100%
2hb9RCSB PDB    PDBbind269aa, >2HB9_1|Chain... at 100%
2qdtRCSB PDB    PDBbind269aa, >2QDT_1|Chain... at 100%
5dpxRCSB PDB    PDBbind269aa, >5DPX_1|Chains... at 100%
5evdRCSB PDB    PDBbind271aa, >5EVD_1|Chain... at 100%
5evkRCSB PDB    PDBbind271aa, >5EVK_1|Chain... at 100%
5hh6RCSB PDB    PDBbind271aa, >5HH6_1|Chain... at 100%
5hh5RCSB PDB    PDBbind271aa, >5HH5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4nq6RCSB PDB    PDBbind3R9
5ev8RCSB PDB    PDBbind3R9
Entry Information
PDB ID5evb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namemetallo-beta-lactamase L1
Ligand Name3R9
EC.Number E.C.3.5.2.6
Resolution 1.84(Å)
Affinity (Kd/Ki/IC50)Ki=10uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Proc.Natl.Acad.Sci.USA Vol. 113: pp. E3745-E3754
Ligand Properties
Formula C7H12NO2S3
Molecular Weight 238.371
Exact Mass 238.003
No. of atoms 25
No. of bonds 26
Polar Surface Area 131.14
LOGP Value -0.04      (Computed with XLOGP3)
0.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P52700  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com