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Related entries of code: 5f1v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5f1uRCSB PDB    PDBbind297aa, >5F1U_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5f1uRCSB PDB    PDBbind3VN
Entry Information
PDB ID5f1v
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namewildtype dihydrodipicolinate synthase from Campylobacter jejuni (CjDHDPS)
Ligand Name3VN
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Ki=140nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Am.Chem.Soc. Vol. 138: pp. 2014-2020
Ligand Properties
Formula C14H34N4O4
Molecular Weight 322.444
Exact Mass 322.258
No. of atoms 56
No. of bonds 55
Polar Surface Area 185.16
LOGP Value -4.57      (Computed with XLOGP3)
-3.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9PPB4  
Entrez Gene IDNCBI Entrez Gene ID: 905109  
ASDInformation of known allosteric effects of PDB entries
 
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