Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5f6d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2px9RCSB PDB    PDBbind158aa, >2PX9_2|Chain... at 100%
5f6uRCSB PDB    PDBbind157aa, >5F6U_1|Chain... at 98%
5f6vRCSB PDB    PDBbind157aa, >5F6V_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5f6d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSUMO-conjugating enzyme UBC9 (K48A/K49A/E54A)
Ligand Name5VJ
EC.Number E.C.6.3.2
Resolution 1.55(Å)
Affinity (Kd/Ki/IC50)IC50>3mM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Angew.Chem.Int.Ed.Engl. Vol. 55: pp. 5703-5707
Ligand Properties
Formula C12H9NO2S
Molecular Weight 231.270
Exact Mass 231.035
No. of atoms 25
No. of bonds 27
Polar Surface Area 54.55
LOGP Value 2.15      (Computed with XLOGP3)
3.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P63279  
Entrez Gene IDNCBI Entrez Gene ID: 7329  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com