Browse entries in the PDBbind-CN Database

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Related entries of code: 5fdp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3zosRCSB PDB    PDBbind315aa, >3ZOS_1|Chains... at 100%
4bkjRCSB PDB    PDBbind315aa, >4BKJ_1|Chains... at 100%
4ckrRCSB PDB    PDBbind315aa, >4CKR_1|Chain... at 100%
5bvkRCSB PDB    PDBbind324aa, >5BVK_1|Chain... at 96%
5bvnRCSB PDB    PDBbind324aa, >5BVN_1|Chain... at 96%
5bvoRCSB PDB    PDBbind324aa, >5BVO_1|Chain... at 96%
5bvwRCSB PDB    PDBbind324aa, >5BVW_1|Chain... at 96%
6fewRCSB PDB    PDBbind321aa, >6FEW_1|Chain... at 95%
6fexRCSB PDB    PDBbind321aa, >6FEX_1|Chain... at 95%
6filRCSB PDB    PDBbind321aa, >6FIL_1|Chain... at 95%
6gwrRCSB PDB    PDBbind315aa, >6GWR_1|Chains... at 100%
6hp9RCSB PDB    PDBbind315aa, >6HP9_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5fdp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDDR1 receptor tyrosine kinase
Ligand Name5WR
EC.Number E.C.2.7.10.1
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)IC50=309nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 5911-5916
Ligand Properties
Formula C28H33F3N6O
Molecular Weight 526.596
Exact Mass 526.267
No. of atoms 71
No. of bonds 75
Polar Surface Area 67
LOGP Value 3.55      (Computed with XLOGP3)
5.06      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q08345  
Entrez Gene IDNCBI Entrez Gene ID: 780  
ASDInformation of known allosteric effects of PDB entries
 
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