Browse entries in the PDBbind-CN Database

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Related entries of code: 5ggn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ggjRCSB PDB    PDBbind164aa, >5GGJ_1|Chains... *
5ggkRCSB PDB    PDBbind164aa, >5GGK_1|Chains... at 100%
5gglRCSB PDB    PDBbind164aa, >5GGL_1|Chains... at 100%
5ggoRCSB PDB    PDBbind164aa, >5GGO_1|Chains... at 100%
5ggpRCSB PDB    PDBbind164aa, >5GGP_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3lm1RCSB PDB    PDBbindLEC
Entry Information
PDB ID5ggn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameN-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase
Ligand NameLEC
EC.Number E.C.2.4.1
Resolution 1.21(Å)
Affinity (Kd/Ki/IC50)Kd=0.22mM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Proc.Natl.Acad.Sci.USA Vol.113 : pp. 9280-9285
Ligand Properties
Formula C14H18N2O8
Molecular Weight 342.301
Exact Mass 342.106
No. of atoms 42
No. of bonds 43
Polar Surface Area 154.07
LOGP Value -0.41      (Computed with XLOGP3)
-0.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8WZA1  
Entrez Gene IDNCBI Entrez Gene ID: 55624  
ASDInformation of known allosteric effects of PDB entries
 
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