Browse entries in the PDBbind-CN Database

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Related entries of code: 5gn7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3vvaRCSB PDB    PDBbind329aa, >3VVA_1|Chains... *
3w54RCSB PDB    PDBbind329aa, >3W54_1|Chains... at 100%
5zdpRCSB PDB    PDBbind329aa, >5ZDP_1|Chains... at 100%
5gn9RCSB PDB    PDBbind329aa, >5GN9_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5gn5RCSB PDB    PDBbind6XZ

Entry Information
PDB ID5gn7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAlternative oxidase, mitochondrial
Ligand Name6XZ
EC.Number E.C.-.-.-.-
Resolution 3.2(Å)
Affinity (Kd/Ki/IC50)IC50=900nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Faseb J. Vol. 33: pp. 13002-13013
Ligand Properties
Formula C21H23N2O5
Molecular Weight 383.418
Exact Mass 383.161
No. of atoms 51
No. of bonds 54
Polar Surface Area 87.58
LOGP Value 2.15      (Computed with XLOGP3)
2.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q26710  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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