Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5h4j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2hquRCSB PDB    PDBbind164aa, >2HQU_1|Chains... *
3araRCSB PDB    PDBbind164aa, >3ARA_1|Chains... at 100%
3arnRCSB PDB    PDBbind164aa, >3ARN_1|Chains... at 100%
3ehwRCSB PDB    PDBbind164aa, >3EHW_1|Chains... at 100%
4mz5RCSB PDB    PDBbind13aa, >4MZ5_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5h4j
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDeoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
Ligand NameFKM
EC.Number E.C. 3.6.1.23
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=0.13uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Mol. Cancer Ther. Vol. 17: pp. 1683-1693
Ligand Properties
Formula C21H29N3O6S
Molecular Weight 451.536
Exact Mass 451.178
No. of atoms 60
No. of bonds 62
Polar Surface Area 127.87
LOGP Value 1.75      (Computed with XLOGP3)
3.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P33316  
Entrez Gene IDNCBI Entrez Gene ID: 1854  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com