Browse entries in the PDBbind-CN Database

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Related entries of code: 5h63
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3upkRCSB PDB    PDBbindUD1
3v4tRCSB PDB    PDBbindUD1

Entry Information
PDB ID5h63
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTransferase
Ligand NameUD1
EC.Number E.C.-.-.-.-
Resolution 1.92(Å)
Affinity (Kd/Ki/IC50)Kd=1.2uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat Commun Vol. 9: pp. 4283-4283
Ligand Properties
Formula C17H29N3O17P2
Molecular Weight 609.370
Exact Mass 609.097
No. of atoms 68
No. of bonds 70
Polar Surface Area 339.36
LOGP Value -6.80      (Computed with XLOGP3)
-5.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 20
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0DUJ8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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