Browse entries in the PDBbind-CN Database

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Related entries of code: 5i7y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4uitRCSB PDB    PDBbind106aa, >4UIT_1|Chain... at 99%
4uiuRCSB PDB    PDBbind106aa, >4UIU_1|Chain... at 99%
4uivRCSB PDB    PDBbind106aa, >4UIV_1|Chain... at 99%
4uiwRCSB PDB    PDBbind106aa, >4UIW_1|Chain... at 99%
4xy8RCSB PDB    PDBbind123aa, >4XY8_1|Chain... *
4z6hRCSB PDB    PDBbind123aa, >4Z6H_1|Chains... at 100%
4z6iRCSB PDB    PDBbind123aa, >4Z6I_1|Chains... at 100%
5eu1RCSB PDB    PDBbind123aa, >5EU1_1|Chains... at 100%
5f1hRCSB PDB    PDBbind123aa, >5F1H_1|Chains... at 100%
5f1lRCSB PDB    PDBbind123aa, >5F1L_1|Chains... at 100%
5f25RCSB PDB    PDBbind123aa, >5F25_1|Chains... at 100%
5f2pRCSB PDB    PDBbind123aa, >5F2P_1|Chains... at 100%
5i40RCSB PDB    PDBbind102aa, >5I40_1|Chain... at 100%
5i7xRCSB PDB    PDBbind101aa, >5I7X_1|Chain... at 100%
5igmRCSB PDB    PDBbind123aa, >5IGM_1|Chains... at 100%
5ji8RCSB PDB    PDBbind111aa, >5JI8_1|Chain... at 92%
5mkyRCSB PDB    PDBbind106aa, >5MKY_1|Chain... at 99%
6bqaRCSB PDB    PDBbind102aa, >6BQA_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5i88RCSB PDB    PDBbind69G
6bqdRCSB PDB    PDBbind69G
Entry Information
PDB ID5i7y
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBromodomain-containing protein 9, BRD9
Ligand Name69G
EC.Number E.C.-.-.-.-
Resolution 1.45(Å)
Affinity (Kd/Ki/IC50)Kd=52nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 5391-5402
Ligand Properties
Formula C20H21N3O2
Molecular Weight 335.400
Exact Mass 335.163
No. of atoms 46
No. of bonds 48
Polar Surface Area 58.1
LOGP Value 2.15      (Computed with XLOGP3)
3.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9H8M2  
Entrez Gene IDNCBI Entrez Gene ID: 65980  
ASDInformation of known allosteric effects of PDB entries
 
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