Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5ioy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3g1mRCSB PDB    PDBbind236aa, >3G1M_1|Chain... *
3o8gRCSB PDB    PDBbind236aa, >3O8G_1|Chain... at 100%
3o8hRCSB PDB    PDBbind236aa, >3O8H_1|Chain... at 100%
3sdgRCSB PDB    PDBbind236aa, >3SDG_1|Chain... at 100%
3sfiRCSB PDB    PDBbind236aa, >3SFI_1|Chain... at 100%
4m3bRCSB PDB    PDBbind216aa, >4M3B_1|Chain... at 100%
4m3dRCSB PDB    PDBbind216aa, >4M3D_1|Chain... at 100%
4m3eRCSB PDB    PDBbind216aa, >4M3E_1|Chain... at 100%
4m3fRCSB PDB    PDBbind216aa, >4M3F_1|Chain... at 100%
4m3gRCSB PDB    PDBbind216aa, >4M3G_1|Chain... at 100%
5eyrRCSB PDB    PDBbind228aa, >5EYR_1|Chain... at 94%
5ezgRCSB PDB    PDBbind228aa, >5EZG_1|Chain... at 94%
5ezhRCSB PDB    PDBbind228aa, >5EZH_1|Chain... at 94%
5f04RCSB PDB    PDBbind228aa, >5F04_1|Chain... at 94%
5f08RCSB PDB    PDBbind228aa, >5F08_1|Chain... at 94%
5f0cRCSB PDB    PDBbind228aa, >5F0C_1|Chain... at 94%
5f0fRCSB PDB    PDBbind228aa, >5F0F_1|Chain... at 94%
5f0hRCSB PDB    PDBbind228aa, >5F0H_1|Chain... at 94%
5f1jRCSB PDB    PDBbind228aa, >5F1J_1|Chain... at 94%
5f27RCSB PDB    PDBbind228aa, >5F27_1|Chain... at 94%
5iozRCSB PDB    PDBbind216aa, >5IOZ_1|Chain... at 100%
5ipaRCSB PDB    PDBbind216aa, >5IPA_1|Chain... at 100%
5j1rRCSB PDB    PDBbind216aa, >5J1R_1|Chain... at 100%
5j3lRCSB PDB    PDBbind216aa, >5J3L_1|Chain... at 100%
5mwoRCSB PDB    PDBbind228aa, >5MWO_1|Chain... at 94%
5mxkRCSB PDB    PDBbind216aa, >5MXK_1|Chain... at 100%
5mxvRCSB PDB    PDBbind228aa, >5MXV_1|Chain... at 94%
5mylRCSB PDB    PDBbind228aa, >5MYL_1|Chain... at 94%
5mymRCSB PDB    PDBbind228aa, >5MYM_1|Chains... at 94%
5mynRCSB PDB    PDBbind228aa, >5MYN_1|Chain... at 94%
5myrRCSB PDB    PDBbind228aa, >5MYR_1|Chain... at 94%
5mysRCSB PDB    PDBbind228aa, >5MYS_1|Chain... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ioy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTetR-family transcriptional regulatory repressor protein
Ligand Name6C5
EC.Number E.C.-.-.-.-
Resolution 1.77(Å)
Affinity (Kd/Ki/IC50)Kd=6uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Chem. Biol. Vol. 12: pp. 1390-1396
Ligand Properties
Formula C11H20N2O
Molecular Weight 196.289
Exact Mass 196.158
No. of atoms 34
No. of bonds 35
Polar Surface Area 32.34
LOGP Value 1.87      (Computed with XLOGP3)
2.31      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A5U9I4  
Entrez Gene IDNCBI Entrez Gene ID: 45427859  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com