Browse entries in the PDBbind-CN Database

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Related entries of code: 5ipc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5i2eRCSB PDB    PDBbind129aa, >5I2E_1|Chains... *
5i2fRCSB PDB    PDBbind129aa, >5I2F_1|Chains... at 100%
5klyRCSB PDB    PDBbind129aa, >5KLY_1|Chains... at 99%
5klzRCSB PDB    PDBbind129aa, >5KLZ_1|Chains... at 100%
5km0RCSB PDB    PDBbind129aa, >5KM0_1|Chains... at 100%
5km1RCSB PDB    PDBbind129aa, >5KM1_1|Chains... at 100%
5km2RCSB PDB    PDBbind129aa, >5KM2_1|Chains... at 100%
5km3RCSB PDB    PDBbind129aa, >5KM3_1|Chains... at 100%
5kmaRCSB PDB    PDBbind129aa, >5KMA_1|Chains... at 99%
5wa8RCSB PDB    PDBbind129aa, >5WA8_1|Chains... at 99%
5wa9RCSB PDB    PDBbind129aa, >5WA9_1|Chains... at 99%
6n3yRCSB PDB    PDBbind129aa, >6N3Y_1|Chains... at 100%
6n3xRCSB PDB    PDBbind129aa, >6N3X_1|Chains... at 100%
6n3wRCSB PDB    PDBbind129aa, >6N3W_1|Chains... at 100%
6n3vRCSB PDB    PDBbind129aa, >6N3V_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5ipc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehistidine triad nucleotide binding protein 1
Ligand Name6CE
EC.Number E.C.-.-.-.-
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)Kd=13uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochemistry Vol. 56: pp. 3559-3570
Ligand Properties
Formula C20H26N7O6PS
Molecular Weight 523.503
Exact Mass 523.140
No. of atoms 61
No. of bonds 65
Polar Surface Area 247.7
LOGP Value -0.45      (Computed with XLOGP3)
0.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P49773  
Entrez Gene IDNCBI Entrez Gene ID: 3094  
ASDInformation of known allosteric effects of PDB entries

 
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