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Related entries of code: 5j4v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5j47RCSB PDB    PDBbind372aa, >5J47_1|Chain... *
5j4yRCSB PDB    PDBbind372aa, >5J4Y_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5j4v
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameJCV Large T antigen
Ligand Name6JH
EC.Number E.C.3.6.4
Resolution 2.94(Å)
Affinity (Kd/Ki/IC50)IC50=1.4uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 7138-7151
Ligand Properties
Formula C17H11N3OS
Molecular Weight 305.354
Exact Mass 305.062
No. of atoms 33
No. of bonds 36
Polar Surface Area 76.14
LOGP Value 3.76      (Computed with XLOGP3)
4.55      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03072  
Entrez Gene IDNCBI Entrez Gene ID: 1489517  
ASDInformation of known allosteric effects of PDB entries
 
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