Browse entries in the PDBbind-CN Database

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Related entries of code: 5j58
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4eg4RCSB PDB    PDBbind542aa, >4EG4_1|Chains... *
4eg5RCSB PDB    PDBbind542aa, >4EG5_1|Chains... at 100%
4eg6RCSB PDB    PDBbind542aa, >4EG6_1|Chains... at 100%
4eg7RCSB PDB    PDBbind542aa, >4EG7_1|Chains... at 100%
4egaRCSB PDB    PDBbind542aa, >4EGA_1|Chains... at 100%
4mvwRCSB PDB    PDBbind542aa, >4MVW_1|Chains... at 100%
4mvxRCSB PDB    PDBbind542aa, >4MVX_1|Chains... at 100%
4mvyRCSB PDB    PDBbind542aa, >4MVY_1|Chains... at 100%
4mw0RCSB PDB    PDBbind542aa, >4MW0_1|Chains... at 100%
4mw1RCSB PDB    PDBbind542aa, >4MW1_1|Chains... at 100%
4mw2RCSB PDB    PDBbind542aa, >4MW2_1|Chains... at 100%
4mw4RCSB PDB    PDBbind542aa, >4MW4_1|Chains... at 100%
4mw5RCSB PDB    PDBbind542aa, >4MW5_1|Chains... at 100%
4mw6RCSB PDB    PDBbind542aa, >4MW6_1|Chains... at 100%
4mw7RCSB PDB    PDBbind542aa, >4MW7_1|Chains... at 100%
4mw9RCSB PDB    PDBbind542aa, >4MW9_1|Chains... at 100%
4mwbRCSB PDB    PDBbind542aa, >4MWB_1|Chains... at 100%
4mwcRCSB PDB    PDBbind542aa, >4MWC_1|Chains... at 100%
4mweRCSB PDB    PDBbind542aa, >4MWE_1|Chains... at 100%
4zt2RCSB PDB    PDBbind542aa, >4ZT2_1|Chains... at 100%
4zt3RCSB PDB    PDBbind542aa, >4ZT3_1|Chains... at 100%
4zt4RCSB PDB    PDBbind542aa, >4ZT4_1|Chains... at 100%
4zt5RCSB PDB    PDBbind542aa, >4ZT5_1|Chains... at 100%
4zt6RCSB PDB    PDBbind542aa, >4ZT6_1|Chains... at 100%
4zt7RCSB PDB    PDBbind542aa, >4ZT7_1|Chains... at 100%
5j59RCSB PDB    PDBbind542aa, >5J59_1|Chains... at 100%
5nfhRCSB PDB    PDBbind536aa, >5NFH_1|Chains... at 100%
5tquRCSB PDB    PDBbind542aa, >5TQU_1|Chains... at 100%
5v49RCSB PDB    PDBbind542aa, >5V49_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5j58
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMethionyl-tRNA synthetase
Ligand NameN56
EC.Number E.C.-.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)IC50<50nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Eur J Med Chem Vol. 124: pp. 1081-1092
Ligand Properties
Formula C18H19Cl3N5
Molecular Weight 411.736
Exact Mass 410.071
No. of atoms 45
No. of bonds 48
Polar Surface Area 61.42
LOGP Value 5.04      (Computed with XLOGP3)
3.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q38C91  
Entrez Gene IDNCBI Entrez Gene ID: 3662741  
ASDInformation of known allosteric effects of PDB entries

 
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