Browse entries in the PDBbind-CN Database

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Related entries of code: 5jy3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6s5kRCSB PDB    PDBbind245aa, >6S5K_1|Chain... at 98%
1pq6RCSB PDB    PDBbind253aa, >1PQ6_1|Chains... at 97%
1pqcRCSB PDB    PDBbind253aa, >1PQC_1|Chains... at 97%
6s4uRCSB PDB    PDBbind245aa, >6S4U_1|Chains... at 98%
6s4tRCSB PDB    PDBbind245aa, >6S4T_1|Chain... at 98%
6s4nRCSB PDB    PDBbind245aa, >6S4N_1|Chains... at 98%
3kfcRCSB PDB    PDBbind253aa, >3KFC_1|Chains... at 97%
4rakRCSB PDB    PDBbind264aa, >4RAK_1|Chains... at 95%
6jioRCSB PDB    PDBbind274aa, >6JIO_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5jy3
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameOxysterols receptor LXR-beta
Ligand Name6OX
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=12nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) ACS Med Chem Lett Vol. 7: pp. 1207-1212
Ligand Properties
Formula C29H28Cl2F2N2O4S
Molecular Weight 609.511
Exact Mass 608.111
No. of atoms 68
No. of bonds 71
Polar Surface Area 100.8
LOGP Value 5.68      (Computed with XLOGP3)
7.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P55055  
Entrez Gene IDNCBI Entrez Gene ID: 7376  
ASDInformation of known allosteric effects of PDB entries

 
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