Browse entries in the PDBbind-CN Database

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Related entries of code: 5jyy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1bjiRCSB PDB    PDBbind388aa, >1BJI_1|Chain... at 94%
1f8bRCSB PDB    PDBbind388aa, >1F8B_1|Chain... at 94%
1f8cRCSB PDB    PDBbind388aa, >1F8C_1|Chain... at 94%
1f8dRCSB PDB    PDBbind388aa, >1F8D_1|Chain... at 94%
1f8eRCSB PDB    PDBbind388aa, >1F8E_1|Chain... at 94%
1nnbRCSB PDB    PDBbind387aa, >1NNB_1|Chain... at 94%
1xoeRCSB PDB    PDBbind387aa, >1XOE_1|Chain... at 94%
1xogRCSB PDB    PDBbind387aa, >1XOG_1|Chain... at 94%
2qwbRCSB PDB    PDBbind388aa, >2QWB_1|Chain... at 94%
2qwcRCSB PDB    PDBbind388aa, >2QWC_1|Chain... at 94%
2qwdRCSB PDB    PDBbind388aa, >2QWD_1|Chain... at 94%
2qweRCSB PDB    PDBbind388aa, >2QWE_1|Chain... at 94%
2qwfRCSB PDB    PDBbind388aa, >2QWF_1|Chain... at 94%
2qwgRCSB PDB    PDBbind388aa, >2QWG_1|Chain... at 94%
4dgrRCSB PDB    PDBbind389aa, >4DGR_1|Chain... at 94%
4mwqRCSB PDB    PDBbind388aa, >4MWQ_1|Chain... at 100%
4mwrRCSB PDB    PDBbind388aa, >4MWR_1|Chain... at 100%
4mwuRCSB PDB    PDBbind388aa, >4MWU_1|Chain... at 100%
4mwvRCSB PDB    PDBbind388aa, >4MWV_1|Chain... at 100%
4mwwRCSB PDB    PDBbind388aa, >4MWW_1|Chain... at 99%
4mwxRCSB PDB    PDBbind388aa, >4MWX_1|Chain... at 99%
4mwyRCSB PDB    PDBbind388aa, >4MWY_1|Chain... at 99%
4mx0RCSB PDB    PDBbind388aa, >4MX0_1|Chain... at 99%
5l15RCSB PDB    PDBbind397aa, >5L15_1|Chain... *
5l17RCSB PDB    PDBbind397aa, >5L17_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5jyy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameH7N9 A/ Shanghai/2/2013 (shaN9) Neuraminidase
Ligand Name6PY
EC.Number E.C.3.2.1.18
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=8nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 6303-6312
Ligand Properties
Formula C16H28N5O9
Molecular Weight 434.422
Exact Mass 434.189
No. of atoms 58
No. of bonds 58
Polar Surface Area 229.66
LOGP Value -0.50      (Computed with XLOGP3)
-3.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): R4NFR6  
Entrez Gene IDNCBI Entrez Gene ID: 23104238  
ASDInformation of known allosteric effects of PDB entries
 
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