Browse entries in the PDBbind-CN Database

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Related entries of code: 5kgw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1hyvRCSB PDB    PDBbind166aa, >1HYV_1|Chain... at 98%
1hyzRCSB PDB    PDBbind166aa, >1HYZ_1|Chain... at 98%
1qs4RCSB PDB    PDBbind154aa, >1QS4_1|Chains... at 96%
3ao1RCSB PDB    PDBbind163aa, >3AO1_1|Chains... at 99%
3ao2RCSB PDB    PDBbind163aa, >3AO2_1|Chains... at 97%
3ao4RCSB PDB    PDBbind163aa, >3AO4_1|Chains... at 97%
3ao5RCSB PDB    PDBbind163aa, >3AO5_1|Chains... at 97%
3av9RCSB PDB    PDBbind183aa, >3AV9_1|Chains... *
3avaRCSB PDB    PDBbind183aa, >3AVA_1|Chains... at 100%
3avbRCSB PDB    PDBbind183aa, >3AVB_1|Chains... at 100%
3avfRCSB PDB    PDBbind180aa, >3AVF_1|Chains... at 100%
3avgRCSB PDB    PDBbind183aa, >3AVG_1|Chains... at 100%
3avhRCSB PDB    PDBbind183aa, >3AVH_1|Chains... at 100%
3aviRCSB PDB    PDBbind183aa, >3AVI_1|Chains... at 100%
3avjRCSB PDB    PDBbind183aa, >3AVJ_1|Chains... at 100%
3avkRCSB PDB    PDBbind183aa, >3AVK_1|Chains... at 100%
3avlRCSB PDB    PDBbind183aa, >3AVL_1|Chains... at 100%
3avmRCSB PDB    PDBbind183aa, >3AVM_1|Chains... at 100%
3avnRCSB PDB    PDBbind183aa, >3AVN_1|Chains... at 100%
3lptRCSB PDB    PDBbind166aa, >3LPT_1|Chain... at 98%
3lpuRCSB PDB    PDBbind166aa, >3LPU_1|Chain... at 98%
3nf6RCSB PDB    PDBbind183aa, >3NF6_1|Chains... at 100%
3nf7RCSB PDB    PDBbind183aa, >3NF7_1|Chains... at 100%
3nf8RCSB PDB    PDBbind183aa, >3NF8_1|Chains... at 100%
3nf9RCSB PDB    PDBbind183aa, >3NF9_1|Chains... at 100%
3ovnRCSB PDB    PDBbind163aa, >3OVN_1|Chains... at 99%
3zsoRCSB PDB    PDBbind167aa, >3ZSO_1|Chains... at 100%
3zsqRCSB PDB    PDBbind167aa, >3ZSQ_1|Chains... at 100%
3zswRCSB PDB    PDBbind167aa, >3ZSW_1|Chains... at 100%
3zsxRCSB PDB    PDBbind167aa, >3ZSX_1|Chains... at 100%
3zsyRCSB PDB    PDBbind167aa, >3ZSY_1|Chains... at 100%
3zszRCSB PDB    PDBbind167aa, >3ZSZ_1|Chains... at 100%
3zt1RCSB PDB    PDBbind167aa, >3ZT1_1|Chains... at 100%
3zt2RCSB PDB    PDBbind167aa, >3ZT2_1|Chains... at 100%
3zt3RCSB PDB    PDBbind167aa, >3ZT3_1|Chains... at 100%
3zt4RCSB PDB    PDBbind167aa, >3ZT4_1|Chains... at 100%
4ah9RCSB PDB    PDBbind183aa, >4AH9_1|Chains... at 100%
4ahrRCSB PDB    PDBbind183aa, >4AHR_1|Chains... at 100%
4ahsRCSB PDB    PDBbind183aa, >4AHS_1|Chains... at 100%
4ahuRCSB PDB    PDBbind183aa, >4AHU_1|Chains... at 100%
4ahvRCSB PDB    PDBbind183aa, >4AHV_1|Chains... at 100%
4cebRCSB PDB    PDBbind183aa, >4CEB_1|Chains... at 100%
4cgiRCSB PDB    PDBbind183aa, >4CGI_1|Chains... at 100%
4cgjRCSB PDB    PDBbind183aa, >4CGJ_1|Chains... at 100%
4cigRCSB PDB    PDBbind183aa, >4CIG_1|Chains... at 100%
4cj4RCSB PDB    PDBbind183aa, >4CJ4_1|Chains... at 100%
4cjpRCSB PDB    PDBbind183aa, >4CJP_1|Chains... at 100%
4cjqRCSB PDB    PDBbind183aa, >4CJQ_1|Chains... at 100%
4cjrRCSB PDB    PDBbind183aa, >4CJR_1|Chains... at 100%
4ck3RCSB PDB    PDBbind183aa, >4CK3_1|Chains... at 100%
4dmnRCSB PDB    PDBbind163aa, >4DMN_1|Chain... at 98%
4e1mRCSB PDB    PDBbind166aa, >4E1M_1|Chain... at 97%
4e1nRCSB PDB    PDBbind166aa, >4E1N_1|Chain... at 97%
4gvmRCSB PDB    PDBbind163aa, >4GVM_1|Chain... at 97%
4gw6RCSB PDB    PDBbind163aa, >4GW6_1|Chain... at 98%
4jlhRCSB PDB    PDBbind163aa, >4JLH_1|Chain... at 97%
4lh5RCSB PDB    PDBbind182aa, >4LH5_1|Chain... at 97%
4nyfRCSB PDB    PDBbind168aa, >4NYF_1|Chains... at 97%
4o0jRCSB PDB    PDBbind163aa, >4O0J_1|Chain... at 98%
4o55RCSB PDB    PDBbind163aa, >4O55_1|Chain... at 98%
4o5bRCSB PDB    PDBbind163aa, >4O5B_1|Chain... at 97%
4ojrRCSB PDB    PDBbind164aa, >4OJR_1|Chain... at 95%
4tsxRCSB PDB    PDBbind163aa, >4TSX_1|Chain... at 97%
5kgxRCSB PDB    PDBbind163aa, >5KGX_1|Chain... at 97%
6ncjRCSB PDB    PDBbind180aa, >6NCJ_1|Chain... at 100%
6eb2RCSB PDB    PDBbind183aa, >6EB2_1|Chain... at 98%
6eb1RCSB PDB    PDBbind183aa, >6EB1_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5kgxRCSB PDB    PDBbind7SK
Entry Information
PDB ID5kgw
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHIV1 integrase catalytic core domain
Ligand Name7SK
EC.Number E.C.-.-.-.-
Resolution 2.34(Å)
Affinity (Kd/Ki/IC50)IC50=16.1uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Bioorg.Med.Chem.Lett. Vol. 26: pp. 4748-4752
Ligand Properties
Formula C24H27NO4
Molecular Weight 393.475
Exact Mass 393.194
No. of atoms 56
No. of bonds 59
Polar Surface Area 60.69
LOGP Value 5.34      (Computed with XLOGP3)
5.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P12497  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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