Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5klp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1bq3RCSB PDB    PDBbindIHP
1zshRCSB PDB    PDBbindIHP
2lhaRCSB PDB    PDBbindIHP
3eebRCSB PDB    PDBbindIHP
3fzyRCSB PDB    PDBbindIHP
4y94RCSB PDB    PDBbindIHP
5tv1RCSB PDB    PDBbindIHP
6b4hRCSB PDB    PDBbindIHP
6bu0RCSB PDB    PDBbindIHP
6cusRCSB PDB    PDBbindIHP

Entry Information
PDB ID5klp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameYopJ effector HopZ1a, produced by the phytopathogen Pseudomonas syringae
Ligand NameIHP
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=22.7uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat.Struct.Mol.Biol. Vol. 23: pp. 847-852
Ligand Properties
Formula C6H24O24P6
Molecular Weight 666.083
Exact Mass 665.908
No. of atoms 60
No. of bonds 60
Polar Surface Area 501.06
LOGP Value -11.25      (Computed with XLOGP3)
-5.76      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 18
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 24
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6VE93  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com