Browse entries in the PDBbind-CN Database

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Related entries of code: 5l0c
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1rkeRCSB PDB    PDBbind185aa, >1RKE_2|Chain... at 100%
3h2uRCSB PDB    PDBbind188aa, >3H2U_1|Chains... *
3h2vRCSB PDB    PDBbind188aa, >3H2V_1|Chains... at 100%
5l0hRCSB PDB    PDBbind176aa, >5L0H_1|Chain... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5l0hRCSB PDB    PDBbindPIO
Entry Information
PDB ID5l0c
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman metavinculin (residues 959-1134), MVt
Ligand NamePIO
EC.Number E.C.-.-.-.-
Resolution 3.1(Å)
Affinity (Kd/Ki/IC50)Kd=0.7uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Proc.Natl.Acad.Sci.USA Vol. 113: pp. 9539-9544
Ligand Properties
Formula C9H24O17P3
Molecular Weight 497.198
Exact Mass 497.023
No. of atoms 53
No. of bonds 53
Polar Surface Area 340.68
LOGP Value -8.17      (Computed with XLOGP3)
-5.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 13
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P18206  
Entrez Gene IDNCBI Entrez Gene ID: 7414  
ASDInformation of known allosteric effects of PDB entries
 
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