Browse entries in the PDBbind-CN Database

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Related entries of code: 5l3j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1aj6RCSB PDB    PDBbind219aa, >1AJ6_1|Chain... at 93%
1kznRCSB PDB    PDBbind205aa, >1KZN_1|Chain... at 100%
4duhRCSB PDB    PDBbind220aa, >4DUH_1|Chains... at 93%
4zviRCSB PDB    PDBbind377aa, >4ZVI_1|Chain... at 100%
5z4hRCSB PDB    PDBbind207aa, >5Z4H_1|Chains... at 100%
5z4oRCSB PDB    PDBbind207aa, >5Z4O_1|Chains... at 100%
5z9eRCSB PDB    PDBbind207aa, >5Z9E_1|Chains... at 100%
6f96RCSB PDB    PDBbind221aa, >6F96_1|Chain... at 93%
6f94RCSB PDB    PDBbind221aa, >6F94_1|Chain... at 93%
6f8jRCSB PDB    PDBbind221aa, >6F8J_1|Chain... at 93%
6f86RCSB PDB    PDBbind206aa, >6F86_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5l3j
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE. coli DNA gyrase subunit B
Ligand Name6G9
EC.Number E.C.5.99.1.3
Resolution 2.83(Å)
Affinity (Kd/Ki/IC50)Kd=0.23uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 8941-8954
Ligand Properties
Formula C14H8Br2N4O4S
Molecular Weight 488.111
Exact Mass 485.863
No. of atoms 33
No. of bonds 35
Polar Surface Area 152.42
LOGP Value 4.17      (Computed with XLOGP3)
3.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AES6  
Entrez Gene IDNCBI Entrez Gene ID: 61752852  948211  
ASDInformation of known allosteric effects of PDB entries
 
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