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Related entries of code: 5l6o
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5l6pRCSB PDB    PDBbind298aa, >5L6P_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5l6o
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEphrin type-B receptor 3 (EphB3) kinase domain
Ligand Name6P6
EC.Number E.C.2.7.10.1
Resolution 1.88(Å)
Affinity (Kd/Ki/IC50)IC50=6nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Am.Chem.Soc. Vol. 138: pp. 10554-10560
Ligand Properties
Formula C16H13N3O
Molecular Weight 263.294
Exact Mass 263.106
No. of atoms 33
No. of bonds 35
Polar Surface Area 54.88
LOGP Value 3.10      (Computed with XLOGP3)
3.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P54753  
Entrez Gene IDNCBI Entrez Gene ID: 2049  
ASDInformation of known allosteric effects of PDB entries
 
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