Browse entries in the PDBbind-CN Database

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Related entries of code: 5l9h
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5g2bRCSB PDB    PDBbind360aa, >5G2B_1|Chains... *
5g57RCSB PDB    PDBbind360aa, >5G57_1|Chains... at 100%
5g5vRCSB PDB    PDBbind360aa, >5G5V_1|Chains... at 100%
5l8cRCSB PDB    PDBbind360aa, >5L8C_1|Chains... at 100%
5l8yRCSB PDB    PDBbind360aa, >5L8Y_1|Chains... at 100%
6rfwRCSB PDB    PDBbind360aa, >6RFW_1|Chains... at 100%
6rfnRCSB PDB    PDBbind360aa, >6RFN_1|Chains... at 100%
6gxqRCSB PDB    PDBbind360aa, >6GXQ_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5l9h
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCLASS 1 PHOSPHODIESTERASE PDEB1
Ligand NameCVL
EC.Number E.C.3.1.4.-
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)IC50=0.4uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Med. Chem. Vol. 61: pp. 3870-3888
Ligand Properties
Formula C26H32N6O4
Molecular Weight 492.570
Exact Mass 492.249
No. of atoms 68
No. of bonds 71
Polar Surface Area 114.82
LOGP Value 4.71      (Computed with XLOGP3)
3.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8WQX9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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